Professor Yang
Contact Information
Yang's LaboratoryRoom 532, Lujiaxi Building, College of Chemistry and Chemical Engineering, Xiamen University, Xiamen 361005, China
Ph: +86 (0) 592-218 7601Our Members
杨朝勇
Email: cyyang@xmu.edu.cn; chaoyongyang@gmail.com
Group Website: http://www.yang-lab.com/ & http://chem.xmu.edu.cn/teacher.asp?id=166
Phone Number: 0592-2187601
主要经历
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研究兴趣
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学术任职
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获奖情况
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承担主要科研项目
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发表论文(Research ID: F-9741-2010, http://orcid.org/0000-0002-2374-5342)共发表SCI论文 202,论文被引 10400余次, H index=55, 以第1作者或通讯作者发表SCI影响因子> 5.0的论文 97篇, 其中Nature Commun 3 篇、PNAS1 篇、Acc. Chem. Res.1篇、JACS 6 篇、Angew Chemie15 篇、AC28篇、Lab Chip10 篇、CC 14篇。
86-18750268060; zhuzhi8420@gmail.com; zhuzhi@xmu.edu.cn
Working Experience______________________________________________________________Peng Zhang
个人简历:
副教授、特任研究员 (厦门大学化学系 2019.11–至今)
特任副研究员/副研究员 (上海交通大学分子医学研究院2018–2019)
助理研究员 (福州大学生物科学与工程学院2016–2018)
理学博士 (厦门大学化学系化学生物学专业 2010–2016)
理学学士 (厦门大学化学系化学生物学专业 2006–2010)
获得荣誉:
厦门大学“南强青年拔尖人才支持计划”(2019)
上海市“晨光计划”A类(2018)
研究兴趣:
分子定向进化、微纳界面组装及识别机制、微流控分析、液体活检、单细胞分析、生物传感
近期主要代表论著:
1. Jialu Zhang, Bingqian Lin, Lingling Wu, Mengjiao Huang, Xingrui Li, Huimin Zhang, Jia Song, Wei Wang, Gang Zhao,* Yanling Song,* and Chaoyong Yang*, DNA Nanolithography Enables Highly Ordered Recognition Interface in Microfluidic Chip for Efficient Capture and Release of Circulating Tumor Cells, Angew. Chem. Int. Ed. 2020, DOI: 10.1002/anie.202005974
2. M.J. Huang, J.J. Yang, T. Wang, J. Song, J.L. Xia, L.L. Wu, W. Wang, Q.Y. Wu, Z. Zhu, Y.L. Song*, C.Y. Yang*, Homogeneous, Low-volume, Efficient and Sensitive Quantitation of Circulating Exosomal PD-L1 for Cancer Diagnosis and Immunotherapy Response Prediction. Angew. Chem. Int. Ed doi.org/10.1002/anie.201916039(2020)
3. L.L. Wu, # H.M. Ding, # X. Qu, # X.A. Shi, J.M.Yang, M.J. Huang, J.L. Zhang, H.M. Zhang, J. Song, L. Zhu, Y.L. Song*, Y.Q. Ma*, C.Y. Yang*, Fluidic Multivalent Membrane Nanointerface Enables Synergetic Enrichment of Circulating Tumor Cells with High Efficiency and Viability, J. Am. Chem. Soc. doi.org/10.1021/jacs.9b13782(2020)
4. J. Song, Y. Zheng, M.J. Huang, L.L. Wu, W. Wang, Z. Zhu, Y.L. Song*, C.Y. Yang, A Sequential Multi-dimensional Analysis Algorithm for Aptamer Identification based on Structure Analysis and Machine Learning. Anal. Chem. doi.org/10.1021/acs.analchem.9b05203(2020)
5. Y.L. Song; Y.Z. Shi; M.J. Huang; W. Wang; Y. Wang; J.Cheng.; Z.C. Lei; Z. Zhu.; C.Y. Yang*, Bioinspired Engineering of a Multivalent Aptamer-Functionalized Nanointerface to Enhance the Capture and Release of Circulating Tumor Cells. Angew. Chem. Int. Ed. 58(8), 2236(2019)
6. M.J. Huang, J. Song, P.F. Huang, X.F. Chen, W. Wang, Z. Zhu, Y.L. Song*, C.Y. Yang*. Molecular Crowding Evolution for Enabling Discovery of Enthalpy-Driven Aptamers for Robust Biomedical Applications. Anal. Chem. 91, 10879(2019)
7. B.Q. Lin #, Y. An#, L.Y. Meng, H.M. Zhang, J. Song, Z. Zhu, W. Liu*, Y.L. Song*, C.Y. Yang*. Control of CRISPR-Cas9 with small molecule-activated allosteric aptamer regulating sgRNAs. Chem. Commun., 55, 12223(2019)
8. Y.L. Song; B.Q. Lin; Tian, T.; X. Xu; W. Wang; Q.Y. Ruan; J.J. Guo; Z. Zhu; C.Y. Yang*, Recent Progress in Microfluidics-Based Biosensing. Analytical Chemistry 91 (1), 388(2019)
9. M.X. Gao; J.J. Guo; Y.L. Song *; Z. Zhu*; C.Y. Yang*. Detection of T4 Polynucleotide Kinase via Allosteric Aptamer Probe Platform, ACS Appl. Mater. Interfaces, 9, 38356(2017)
10. Y.L. Song; Tian, T; Y.Z Shi; W.L. Liu; Y. Zou, T. Khajavand; Z. Zhu; C.Y. Yang*. Enrichment and Single-Cell Analysis of Circulating Tumor Cells, Chemical Science, 8, 1736(2017)
11. Tian, T; Y. An; Y. Wu; Y.L. Song*; Z. Zhu; C.Y. Yang*. Integrated Distance-Based Origami Paper Analytical Device for One-Step Visualized Analysis, ACS Applied Materials Interfaces, 9, 30480(2017)
86-18750268060; ljzhou@xmu.edu.cn
Working Experience______________________________________________________________
86-18717959686; linglingwu1990@126.com
Work Experience ____________________________________________________
Jul 2020-Present Assistant professor, Institute of Molecular Medicine, Shanghai Jiao Tong University, Shanghai, China
Jul 2018-Jun 2020 Postdoctoral fellow, Institute of Molecular Medicine, Shanghai Jiao Tong University, Shanghai, China
Education ___________________________________________________________
Sep 2011-Jun 2018 Ph.D. in Analytical Chemistry, College of Chemistry and Molecular Sciences, Wuhan University, Wuhan, China
Research Advisor: Dr. Dai-Wen Pang
Sep 2007-Jun 2011 B. S. of Pharmaceutical Engineering, Northwest Agriculture & Forestry University, Xi'an, China
Honors and Awards _________________________________________________
2018 Outstanding graduate of Wuhan University
2014 National Scholarship for Doctoral Candidate
2008 National Scholarship
Publications ________________________________________________________
1. Wu, L. L.,# Zhang, Z. L., Tang, M., Zhu, D. L., Dong, X. L., Hu, J., Qi, C. B., Tang, H. W., Pang, D. W., * Spectrally Combined Encoding for Profiling Heterogeneous Circulating Tumor Cells Using a Multifunctional Nanosphere-Mediated Microfluidic Platform. Angew. Chem. Int. Ed. 2020, 59, 11240.
2. Wu, L. L.,# Ding, H. M., # Qu, X., # Shi, X. N., Yang, J. M., Huang, M. J., Zhang, J. L., Zhang, H. M.; Song, J., Zhu, L., Song, Y. L., * Ma, Y. Q., * Yang, C. Y.,* Fluidic Multivalent Membrane Nanointerface Enables Synergetic Enrichment of Circulating Tumor Cells with High Efficiency and Viability. J. Am. Chem. Soc. 2020, 142, 4800.
3. Wu, L. L., Wang, Y. D., Zhu, L., Liu, Y. L., Wang, T., Liu, D., Song, Y. L., Yang, C. Y.,* Aptamer-Based Liquid Biopsy. ACS Appl. Bio Mater. 2020, 3, 2743.
4. Wu, L. L.,# Zhu, L., Huang, M. J., Song, J., Zhang, H. M, Song, Y. L., Wang, W., Yang, C. Y., * Aptamer-Based Microfluidics for Isolation, Release and Analysis of Circulating Tumor Cells. TrAC, Trends Anal. Chem. 2019, 117, 69.
5. Wu, L. L,# Xu, X., Sharma, B., Wang, W., Qu, X., Zhu, L., Zhang, H. M., Song, Y. L., Yang, C. Y.,* Beyond Capture: Circulating Tumor Cell Release and Single-cell Analysis. Small Methods 2019, 3, 1800544.
6. Wu, L. L,# Tang, M., Zhang, Z. L., Qi, C. B., Hu, J., Ma, X. Y., Pang, D. W.,* Chip-Assisted Single-Cell Biomarker Profiling of Heterogeneous Circulating Tumor Cells Using Multifunctional Nanospheres. Anal. Chem. 2018, 90, 10518.
7. Wu, L. L.,# Wen, C. Y., Hu, J., Tang, M., Qi, C. B., Li, N., Liu, C., Chen, L., Pang, D. W., Zhang, Z. L.,* Nanosphere-Based One-Step Strategy for Efficient and Nondestructive Detection of Circulating Tumor Cells. Biosens. Bioelectron. 2017, 94, 219.
8. Ma, X. Y.,# Wu. L. L.,# Chen, L., Qin, Y. H., Hu, J., Tang, M., Xu, C. M., Qi, C. B., Zhang, Z. L., Pang, D. W.,* Enhanced and High-Purity Enrichment of Circulating Tumor Cells Based on Immunomagnetic Nanospheres. ACS Appl. Nano Mater. 2018, 1, 4019. (Co-first author)
9. Chen, L.,# Wu, L. L., # Zhang, Z. L., Hu, J., Tang, M., Qi, C. B., Li, N., Pang, D. W.,* Biofunctionalized Magnetic Nanospheres-Based Cell Sorting Strategy for Efficient Isolation, Detection and Subtype Analyses of Heterogeneous Circulating Hepatocellular Carcinoma Cells. Biosens. Bioelectron. 2016, 85, 633. (Co-first author)
10. Wen, C. Y.,# Wu, L. L.,# Zhang, Z. L., Hu, J., Tang, M., Sun, E. Z., Gong, Y. P., Yu, J., Pang, D. W.,* Quick-Response Magnetic Nanospheres for Rapid, Efficient Capture and Sensitive Detection of Circulating Tumor Cells. ACS Nano 2014, 8, 941. (Co-first author)
86-15859257624; zhanghuimin2017@foxmail.com
Work Experience ____________________________________________________
上海交通大学, 医学院-新华医院, 课题组PI
教育经历:
(1) 2013-09 至 2018-06, 北京师范大学, 生物信息, 博士
(2) 2009-09 至 2013-06, 兰州大学, 数学与应用数学, 学士
博士后工作经历:
(1) 2018-08 至 2020-08, 上海交通大学,医学院-仁济医院
科研与学术工作经历:
在过去的五年里,以第一或通讯作者身份发表了24篇学术论文,包括1篇Nat. Biotechnol.、3篇Nat. Commun.、2篇Proc. Natl. Acad. Sci. U. S. A等。
1.Jiao Cao#; Zhong Zheng#; Di Sun#; Xin Chen; Rui Cheng; Tianpeng Lv; Yu An; Junhua Zheng*; Jia Song*; Lingling Wu*; Chaoyong Yang*; Decoder-seq enhances mRNA capture efficiency in spatial RNA sequencing,Nature Biotechnology, 2024. https://doi.org/10.1038/s41587-023-02086-y
2.Xinrui Lin#; Yingwen Chen#; Li Lin#; Kun Yin; Rui Cheng; Xin Lin; Xiaoyu Wang; Ye Guo; Zhaorun Wu; Yingkun Zhang; Jin Li*; Chaoyong Yang*; Jia Song*; mitoSplitter: A mitochondrial variants-based method for efficient demultiplexing of pooled single-cell RNA-seq, Proceedings of the National Academy of Sciences of the United States of America, 2023, 120(39), e2307722120.
3.Xiaoxu Guo#; Fanghe Lin#; Chuanyou Yi; Juan Song; Di Sun; Li Lin; Zhixing Zhong; Zhaorun Wu; Xiaoyu Wang; Yingkun Zhang; Jin Li; Huimin Zhang*; Feng Liu*; Chaoyong Yang*; Jia Song* ; Deep transfer learning enables lesion tracing of circulating tumor cells, Nature Communications, 2022, 13: 7687.
4.Shichao Lin#; Kun Yin#; Yingkun Zhang#; Fanghe Lin#; Xiaoyong Chen; Xi Zeng; Xiaoxu Guo; Huimin Zhang; Jia Song*; chaoyong Yang*; Well-TEMP-seq as a microwell-based strategy for massively parallel profiling of single-cell temporal RNA dynamics, Nature Communications, 2023, 14:1272.
5.Li Lin#; Yufeng Zhang#; Weizhou Qian#; Yao Liu; Yingkun Zhang; Fanghe Lin; Cenxi Liu; Guangxing Lu; Di Sun; Xiaoxu Guo; YanLing Song; Jia Song*; Chaoyong Yang*; Jin Li*; LINEAGE: Label-free identification of endogenous informative single-cell mitochondrial RNA mutation for lineage analysis, Proceedings of the National Academy of Sciences of the United States of America,2022, 119(5): e2119767119.
6.Jia Song#; Yao Liu#; Xuebing Zhang; Qiuyue Wu; Juan Gao; Wei Wang; Jin Li*; Yanling Song*; Chaoyong Yang* ; Entropy Subspace Separation-based Clustering for Noise Reduction (ENCORE) of scRNA-seq Data, Nucleic Acids Research, 2021, 49(3): e18.
7.Xing Xu#; Li Lin#; Jian Yang#; Weizhou Qian#; Rui Su; Xiaoxu Guo; Linfeng Cai; Zirun Zhao; Jia Song*; Chaoyong Yang*; Simultaneous Single-Cell Genome and Transcriptome Sequencing in Nanoliter Droplet with Digital Microfluidics Identifying Essential Driving Genes, Nano Today, 2022, 46: 101596.
8.Kun Yin#; Meijuan Zhao#; Li Lin#; Yingwen Chen; Shanqing Huang; Chun Zhu; Xuan Liang; Fanghe Lin; Haopai Wei; Huimin Zeng; Zhi Zhu; Jia Song*; Chaoyong Yang*; Well‐Paired‐Seq: A Size‐ Exclusion and Locally Quasi‐Static Hydrodynamic Microwell Chip for Single‐Cell RNA‐Seq, Small Methods, 2022, 6: 2200341.
9.Ziyang Lu#; Fanghe Lin#; Tao Li#; Jinhui Wang; Cenxi Liu; Guangxing Lu; Bin Li; MingPei Pan; Shaohua Fan; Junqiu Yue; He Huang; Jia Song*; Chao Gu*; Jin Li*; Identification of clinical and molecular features of recurrent serous borderline ovarian tumour, eClinicalMedicine, 2022, 46: 101377.
10.Di Sun; Miao Sun; Jialu Zhang; Xin Lin; Yinkun Zhang; Fanghe Lin; Peng Zhang; Chaoyong Yang; Jia Song*; Computational tools for aptamer identification and optimization, Trends in Analytical Chemistry, 2022, 157: 116767 .
11.Yingkun Zhang; Xinrui Lin; Zhixian Yao; Di Sun; Xin Lin; Xiaoyu Wang; Chaoyong Yang; Jia Song*; Deconvolution algorithms for inference of the cell-type composition of the spatial transcriptome, Computational and Structural Biotechnology Journal, 2023, 21: 176-184.
12.Jia Song; Yuan Zheng; Mengjiao Huang; Lingling Wu; Wei Wang; Zhi Zhu; Yanling Song; Chaoyong Yang ; A Sequential Multidimensional Analysis Algorithm for Aptamer Identification based on Structure Analysis and Machine Learning, Analytical Chemistry, 2020, 92: 3307-3314.
13.Qianqian Zhang; Xing Xu; Li Lin; Jian Yang; Xing Na; Xin Chen; Lingling Wu; Jia Song*; Chaoyong Yang ; Cilo-seq: highly sensitive cell-in-library-out single-cell transcriptome sequencing with digital microfluidics, Lab on a Chip, 2022, 22: 1971-1979.
14.Liyuan Lin#; Jia Song#; Jian Li; Xiaolei Zuo; Hong Wei; Chaoyong Yang; Wei Wang ; Imaging the in vivo Growth Patterns of Bacteria in Human Gut Microbiota, Gut Microbes, 2021, 13(1): e1960134.
15.Xing Xu#; Qianqian Zhang#; Jia Song#; Qingyu Ruan#; Weidong Ruan; Yujie Chen; Jian Yang; Xuebing Zhang; Yanling Song; Zhi Zhu; Chaoyong Yang*. A Highly Sensitive, Accurate, and Automated Single-Cell RNA Sequencing Platform with Digital Microfluidics, Analytical Chemistry, 2020, 92: 8599-8606.
16.Xi Zeng#; Xiaoxu Guo#; Shaowei Jiang#; Xiaoping Yang; Zhixing Zhong; Siyu Liu; Zhi Zhu*; Jia Song*; Chaoyong Yang*; Digital-scRRBS: a cost-effective, highly sensitive and automated single-cell methylome analysis platform via digital microfluidics. Analytical Chemistry, 2023, 95, 13313−13321
17.Xi Zeng#; Shaowei Jiang#; Zhixing Zhong#; Xiaoping Yang; Qiuyue Chen; Jin Li*; Zhi Zhu*; Jia Song*; Chaoyong Yang*; DIRECT: Digital Microfluidics for Isolation-Free Shared Library Construction of Single-Cell DNA Methylome and Transcriptome. Small Methods, 2023, 2301075.
86-13951896772; linscnano@163.com
Aug 2022-Present Associate professor, Tan Kah Kee Innovation Laboratory, Xiamen University, Xiamen, China
Jul 2020-Jul 2022 Postdoctoral fellow, College of Chemistry and Chemical Engineering, Xiamen University, Xiamen, China
Sep 2015-Jun 2020 Ph.D., College of Engineering and Applied Sciences, Nanjing University, Nanjing, China
Nov 2018-Jan 2019 Visiting Scholar, University of Massachusetts Amherst, USA
Sep 2011-Jun 2015 B.S., College of Engineering and Applied Sciences, Nanjing University, Nanjing, China
2019 Excellent Graduate Student of Nanjing University
2019 Talent Scholarship of Nanjing University
2019 Baxter China Young Investigator Awards
2019 NeoBioscience Scholarship
2016 Talent Scholarship of Nanjing University
2015 The First-class Academic Scholarship of Nanjing University
1. Shichao Lin#, Huajie Ze#, Xia-Guang Zhang, Yue-Jiao Zhang, Juan Song, Huimin Zhang, Han-Liang Zhong, Zhi-Lan Yang, Chaoyong Yang, Jian-Feng Li, Zhi Zhu*. Direct and Simultaneous Identification of Multiple Mitochondrial Reactive Oxygen Species in Living Cells Using a SERS Borrowing Strategy. Angew. Chem. Int. Ed., 2022, 61, e202203511.
2. Xianzhi Zhang#, Shichao Lin#, Rui Huang, Aarohi Gupta, Stefano Fedeli, Roberto Cao-Milán, David C. Luther, Yuanchang Liu, Mingdi Jiang, Gengtan Li, Brayan Rondon, Hui Wei, Vincent M. Rotello*. Degradable ZnS-Supported Bioorthogonal Nanozymes with Enhanced Catalytic Activity for Intracellular Activation of Therapeutics. J. Am. Chem. Soc., 2022, 144, 28, 12893-12900.
3. Shichao Lin#, Yilong Liu#, Mingxia Zhang, Xing Xu, Yingwen Chen, Huimin Zhang*, Chaoyong Yang*. Microfluidic single-cell transcriptomics: moving towards multimodal and spatiotemporal omics. Lab on a Chip, 2021, 21, 3829-3849.
4. Shichao Lin#, Yuan Cheng#, He Zhang#, Xiaoyu Wang, Yuye Zhang, Yuanjian Zhang, Leiying Miao, Xiaozhi Zhao, Hui Wei*. Copper tannic acid coordination nanosheet: a potent nanozyme for scavenging ROS from cigarette smoke. Small, 2019, 201902123.
5. Shichao Lin, Hui Wei*. Design of high performance nanozymes: a single-atom strategy. Sci. China Life Sci., 2019, 62, 710-712.
6. Shichao Lin, Yihong Zhang, Wen Cao, Xiaoyu Wang, Li Qin, Min Zhou, Hui Wei*. Nucleobase-mediated synthesis of nitrogen-doped carbon nanozymes as efficient peroxidase mimics. Dalton Trans., 2019, 48, 1993-1999.
7. Shichao Lin#, Hanjun Cheng#, Qiran Ouyang, Hui Wei*. Deciphering the quenching mechanism of 2D MnO2 nanosheet towards Au nanocluster fluorescence to design effective glutathione biosensor. Anal. Methods, 2016, 8, 3935-3940.
Gao Juan